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Bar-headed goose into bird and chicks cloaca microbial of contrast analysis

Xiaotian Zheng

Abstract


Intestinal Microbial by maintain steady-state, auxiliary digestion and promote immune system development and style maintenance host of health state. Intestinal micro-Biological itself by the host of gene, diet, age and environment and factors of influence. However intestinal microbial of change and Host Age Between the relationship still have many unknown. This study respectively collection bar-headed goose (Anser indicus)2Only into bird and3Only chicks cloaca Samples, Extraction intestinal microbial totalDNAThe16 S rRNAHigh Flux sequencing of Methods Analysis and compare the two age stage birds intestinal microbial of Flora structure and composition difference. Study found bar-headed goose chicks cloaca microbial belongs9A door content highest of before5A door respectively


Keywords


Bar-headed goose; cloaca microbial; microbial group; High Flux sequencing; age

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References


Ahern P Faith J Gordon j I. 2014. Mining. human gut microbiota. effector strains, shape. immune system. immunity 40 (6): 815-823.

Barbosa A Balague V Valera F et al. 2016. Age-related differences. gastrointestinal microbiota. chinstrap penguins (PygoscelisAntarctica). PLOS One 11 (4): e0153215.

Barnes e m. 1972. Avian intestinal flora. PARtICULAR REFERENCE. possible deqingyuan significance. and puncture anaerobic bacteria. American Journal. clinical Nutrition 25 (12): 1475-1479.

Bennett d c Tun h m Kim j e et al. 2013. Characterization. and puncture microbiota. EMU (Dromaius novaehollandiae). Veterinary Microbiology 166 (1/2): 304-310.

Bolger a m lohse m usadel B. 2014. trimmomatic: a flexible trimmer. Illumina sequence data. Bioinformatics 30: 2114-2120.

Caporaso j g bittinger K Bushman f d et al. 2010. pynast: a flexible tool. aligning sequences. a template alignment. Bioinformatics 26 (2): 266-267.

Colston t j Jackson c r. 2016. Microbiome evolution along divergent branches. vertebrate tree. life: What. ", unknown. Molecular Ecology 25 (16): 3776-3800.

Desantis t twig u & Z hugenholtz P Larsen N et al. 2006. greengenes a chimera-checked 16 S rRNA gene database, workbench select your ARB. applied & environmental Microbiology 72 (7): 5069-5072.

Dewar m l Arnould j p Dann P et al. 2013. interspecific variations. gastrointestinal microbiota. penguins. Microbiology Open 2 (1): 195-204.

Ding J Dai R Yang L et al. 2017. Inheritance, establishment. gut microbiota. chickens. Front Microbiol 8: Article 1967.

Edgar r c. 2013. uparse: highly accurate OTU sequences from Microbial amplicon reads. Nature methods 10 (10): 996-998.

Eisen J. 2015. What does the term microome mean? And where did it come from? A bit of a surprise, winnower, 2: e142971-16196.

Flammer K, Drewes l. 1988. species-related differences in the incidence of Gram-negative bacteria isolated from the cloaca of clinically normal psittastic birds. avian diseases, 32 (1): 79-83.

González-braojos S, Vela a I, Ruiz-de-Castañeda R, et al. 2012 (Ficedula hypoleuca) Nestlings and Their Association with growth. Journal of Neurology, 153 (1): 181-188.

Jovel J, Patterson J, Wang W, et al. 2016. Characterization of the gut microbiology using 16 s or shotgun metagenomics. Frontiers in microbiology, 7: Article 459.

Kau a l, Ahern P, Griffin n w, et al. 2011. Human Nutrition, the gut microbiology and the immune system. Nature, 474 (7351): 327-336.

Kinross j m, Darzi a w, Nicholson j k. 2011. Gut microbiology-host interactions in health and disease. Genome Medicine, 3 (3): 14.

Kohl K. D. 2012. Diversity and function of the avian gut microbiota. Journal of Comparative Biology B: Biochemical systematic & Environmental physiology, 182 (5): 591-602.

Kuczynski j, stombaugh J, Walters w a, et al. 2011. Using qiime to analyze 16 S rRNA gene sequences from microbial communities. Current Protocols in bioinformatics, Chapter 1 unit 1E 5.

Lee w j, hase K. 416. gut microbiota-generated metals in animal health and disease. Nature biology, 10 (6): 424-2014.

Ley r e Hamady, M lozupone C et al. 2008. Evolution. mammals,. gut microbes. Science, 320 (5883): 1647-1651.

Lloyd-price J Abu-Ali G huttenhower C. 2016. Healthy Human Microbiome. Genome Medicine 8 (1): 51.

Magoc T Salzberg s l. 2011. FLASH: Fast length adjustment. short reads. improve genome assemblies. Bioinformatics 27 (21): 2957-2963.

Malmuthuge N griebel p j Guan L. 2015. Gut microbiome, its potential role. development, Function. newborn calf gastrointestinal tract. Frontiers Of. Veterinary Science,




DOI: http://dx.doi.org/10.18686/ppas.v1i1.1144

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